Brain Informatics: Difference between revisions
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[http://api.brain-map.org/examples/svgoverlay/index.html Allen Brain Atlas API] | <html><iframe width="420" height="315" src="http://www.youtube.com/embed/KJJdXtmA4pQ" frameborder="0" allowfullscreen></iframe></html> | ||
<html><iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless" style="float:right"></iframe> | |||
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{| class="wikitable" style="background-color:white;" | |||
|+Neural Informatics Tools | |||
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! Link !! Description | |||
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|[http://api.brain-map.org/examples/svgoverlay/index.html Allen Brain Atlas API] || Allen Institute's annotated reference atlases have SVG files that contain structural boundaries. | |||
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|[http://www.nrcam.uchc.edu/vcell_software/user_guide.html VCell] || Most useful cell modeling tool I've seen so far. | |||
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|[http://vcell.org/bionetgen/ BioNetGen] || A web-based tool for automatically generating a biochemical reaction networks from user-specified rules for biomolecular interactions. | |||
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|[http://bionumbers.hms.harvard.edu/ B10NUMB3R5] || (BIONUMBERS) A database of useful biological numbers. | |||
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|[http://www.bioinformaticsservices.com/ BioInformatics Services] || BioInformatics Services is a biotechnology consulting firm specializing in using computational biology to solve complex biological and data analysis problems. | |||
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|[http://www.cellmigration.org/resource/modeling/model_resources.shtml#softwares cellmigrationgateway] || modeling software | |||
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|[http://www.cellml.org/ CellML] || The CellML language is an open standard based on the XML markup language at the University of Auckland and affiliated research groups. | |||
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|[https://sites.google.com/site/compcellbio/ CompCell Bio Web] || Development site for teaching modules on quantitative cell biology. | |||
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|[http://doqcs.ncbs.res.in/ DOQCS] || Quantitative Cellular Signaling (DOQCS) is a repository of models of signaling pathways. | |||
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|[http://www.e-cell.org/ecell/ E-Cell] || A Multi-Algorithm, Multi-Timescale Simulation Software Environment. | |||
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|[http://gfit.sourceforge.net/ Gfit] || A program for global regression analysis of experimental data. | |||
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|[http://www.kitware.com/ Kitware] || Professional Visualization Solutions, Tools and Support. | |||
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|[http://www.mcell.cnl.salk.edu/ MCell] || General Monte Carlo Simulator of Cellular Microphysiology. | |||
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|[http://mnm.engr.uconn.edu/MNM/SMSSearchServlet Minimotif Miner] || Application to search for short sequence motifs in Proteins. | |||
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{{Box|width=255px|Bioinformatics Tools| | |||
*[http://bbid.grc.nia.nih.gov/ BBID-Biological Biochemical Image Database] | |||
}} | |||
Latest revision as of 20:21, 13 May 2013
<html><iframe width="420" height="315" src="http://www.youtube.com/embed/KJJdXtmA4pQ" frameborder="0" allowfullscreen></iframe></html>
<html><iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless" style="float:right"></iframe> </html>
| Link | Description |
|---|---|
| Allen Brain Atlas API | Allen Institute's annotated reference atlases have SVG files that contain structural boundaries. |
| VCell | Most useful cell modeling tool I've seen so far. |
| BioNetGen | A web-based tool for automatically generating a biochemical reaction networks from user-specified rules for biomolecular interactions. |
| B10NUMB3R5 | (BIONUMBERS) A database of useful biological numbers. |
| BioInformatics Services | BioInformatics Services is a biotechnology consulting firm specializing in using computational biology to solve complex biological and data analysis problems. |
| cellmigrationgateway | modeling software |
| CellML | The CellML language is an open standard based on the XML markup language at the University of Auckland and affiliated research groups. |
| CompCell Bio Web | Development site for teaching modules on quantitative cell biology. |
| DOQCS | Quantitative Cellular Signaling (DOQCS) is a repository of models of signaling pathways. |
| E-Cell | A Multi-Algorithm, Multi-Timescale Simulation Software Environment. |
| Gfit | A program for global regression analysis of experimental data. |
| Kitware | Professional Visualization Solutions, Tools and Support. |
| MCell | General Monte Carlo Simulator of Cellular Microphysiology. |
| Minimotif Miner | Application to search for short sequence motifs in Proteins. |
Bioinformatics Tools