ADSP PCA

The Alzheimer's Disease Sequencing Project (ADSP) has made available WES data in vcf format. The following is a step-by-step analysis walkthrough of this dataset. Here the ultimate goal is to develop a platform for Alzheimer's Disease diagnosis based on genome sequencing information. The data for this analysis can be downloaded here:

ADSP_WES_VCF_LATEST_RELEASE.mat.

Both the dataset and the following analysis code are in MATLAB format. Note however there is an R package for reading .mat files. All MATLAB code and custom functions used in the demo walkthrough below can be downloaded here:

GENOS GITHUB CODE REPO

Other Analyses

1. Intro
4. More Neural Nets
2. PCA
3. t-SNE
5. Descriptive Statistics

Additional Genomics Analyses

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Other Analyses

1. Intro
4. More Neural Nets
2. PCA
3. t-SNE
5. Descriptive Statistics

Notes

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Category:ADSP