Neuroscience Tools

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Modeling Links

<a href="#CellDatabases">Database Links</a>

               The following links are provided as a source to other modeling environments, modeling resources and cell based databases. 

<a href="http://vcell.org/bionetgen/" target="_blank">BioNetGen</a> - A web-based tool for automatically generating a biochemical reaction networks from user-specified rules for biomolecular interactions.

<a href="http://bionumbers.hms.harvard.edu/" target="_blank">B10NUMB3R5</a> - (BIONUMBERS) A database of useful biological numbers.

<a href="http://www.bioinformaticsservices.com/" target="_blank">BioInformatics Services</a> - BioInformatics Services is a biotechnology consulting firm specializing in using computational biology to solve complex biological and data analysis problems.

<a href="http://www.cellmigration.org/resource/modeling/model_resources.shtml#softwares" target="_blank">cellmigrationgateway</a> - modeling software

<a href="http://www.cellml.org/" target="_blank">CellML</a>- The CellML language is an open standard based on the XML markup language at the University of Auckland and affiliated research groups.

<a href="https://sites.google.com/site/compcellbio/" target="_blank">CompCell Bio Web</a> - Development site for teaching modules on quantitative cell biology.

<a href="http://doqcs.ncbs.res.in/" target="_blank">DOQCS</a> - Quantitative Cellular Signaling (DOQCS) is a repository of models of signaling pathways.

<a href="http://www.e-cell.org/ecell/" target="_blank">E-Cell</a> - A Multi-Algorithm, Multi-Timescale Simulation Software Environment.

<a href="http://gfit.sourceforge.net/" target="_blank">Gfit</a> - A program for global regression analysis of experimental data.

<a href="http://www.kitware.com/" target="_blank">Kitware</a> - Professional Visualization Solutions, Tools and Support.

<a href="http://www.mcell.cnl.salk.edu/" target="_blank">MCell</a> - General Monte Carlo Simulator of Cellular Microphysiology.

<a href="http://mnm.engr.uconn.edu/MNM/SMSSearchServlet" target="_blank">Minimotif Miner</a> - Application to search for short sequence motifs in Proteins.