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| Link | Description |
|---|---|
| VCell | Most useful cell modeling tool I've seen so far. |
| BioNetGen | A web-based tool for automatically generating a biochemical reaction networks from user-specified rules for biomolecular interactions. |
| B10NUMB3R5 | (BIONUMBERS) A database of useful biological numbers. |
| BioInformatics Services | BioInformatics Services is a biotechnology consulting firm specializing in using computational biology to solve complex biological and data analysis problems. |
| cellmigrationgateway | modeling software |
| CellML | The CellML language is an open standard based on the XML markup language at the University of Auckland and affiliated research groups. |
| CompCell Bio Web | Development site for teaching modules on quantitative cell biology. |
| DOQCS | Quantitative Cellular Signaling (DOQCS) is a repository of models of signaling pathways. |
| E-Cell | A Multi-Algorithm, Multi-Timescale Simulation Software Environment. |
| Gfit | A program for global regression analysis of experimental data. |
| Kitware | Professional Visualization Solutions, Tools and Support. |
| MCell | General Monte Carlo Simulator of Cellular Microphysiology. |
| Minimotif Miner | Application to search for short sequence motifs in Proteins. |
Bioinformatics Tools